added adaptor functions for violin plots

This commit is contained in:
jkriege2 2019-06-18 19:36:54 +02:00
parent f5abce1e6d
commit d9e9a5aa67
14 changed files with 575 additions and 3 deletions

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@ -378,7 +378,7 @@ This group assembles graphs that show their data with symbols and optionally wit
<td>\image html jkqtplotter_simpletest_boxplot_small.png <td>\image html jkqtplotter_simpletest_boxplot_small.png
<td> JKQTPBoxplotVerticalGraph, JKQTPBoxplotHorizontalGraph <td> JKQTPBoxplotVerticalGraph, JKQTPBoxplotHorizontalGraph
<tr> <tr>
<td>\image html JKQTPViolinplotVerticalElement.png <td>\image html JKQTPViolinplotVerticalElement_small.png
<td> JKQTPViolinplotVerticalElement, JKQTPViolinplotHorizontalElement <td> JKQTPViolinplotVerticalElement, JKQTPViolinplotHorizontalElement
</table> </table>
@ -422,7 +422,7 @@ This group assembles graphs that show their data with symbols and optionally wit
<td>\image html geo_boxplot_small.png <td>\image html geo_boxplot_small.png
<td> JKQTPBoxplotVerticalElement, JKQTPBoxplotHorizontalElement <td> JKQTPBoxplotVerticalElement, JKQTPBoxplotHorizontalElement
<tr> <tr>
<td>\image html JKQTPViolinplotVerticalElement.png <td>\image html JKQTPViolinplotVerticalElement_small.png
<td> JKQTPViolinplotVerticalElement, JKQTPViolinplotHorizontalElement <td> JKQTPViolinplotVerticalElement, JKQTPViolinplotHorizontalElement
</table> </table>

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@ -107,5 +107,17 @@ Finally note that if you use `JKQTPViolinplotHorizontalElement` instead of the `
![jkqtplotter_simpletest_violinplot_hor](https://raw.githubusercontent.com/jkriege2/JKQtPlotter/master/screenshots/jkqtplotter_simpletest_violinplot_hor.png) ![jkqtplotter_simpletest_violinplot_hor](https://raw.githubusercontent.com/jkriege2/JKQtPlotter/master/screenshots/jkqtplotter_simpletest_violinplot_hor.png)
# Adapters as shortcuts to drawing Violin Plots
Note that there also exist "adapters" that allow to draw violin plots in one line of code:
```.cpp
jkqtpstatAddVViolinplotHistogramAndOutliers(plot->getPlotter(), datastore1->begin(randomdatacol1), datastore1->end(randomdatacol1), -5);
jkqtpstatAddHViolinplotHistogramAndOutliers(plot->getPlotter(), datastore1->begin(randomdatacol1), datastore1->end(randomdatacol1), -5);
jkqtpstatAddVViolinplotHistogram(plot->getPlotter(), datastore1->begin(randomdatacol1), datastore1->end(randomdatacol1), -10);
jkqtpstatAddHViolinplotHistogram(plot->getPlotter(), datastore1->begin(randomdatacol1), datastore1->end(randomdatacol1), -10);
jkqtpstatAddVViolinplotKDEAndOutliers(plot->getPlotter(), datastore1->begin(randomdatacol1), datastore1->end(randomdatacol1), -15);
jkqtpstatAddHViolinplotKDEAndOutliers(plot->getPlotter(), datastore1->begin(randomdatacol1), datastore1->end(randomdatacol1), -15);
jkqtpstatAddVViolinplotKDE(plot->getPlotter(), datastore1->begin(randomdatacol1), datastore1->end(randomdatacol1), -20);
jkqtpstatAddHViolinplotKDE(plot->getPlotter(), datastore1->begin(randomdatacol1), datastore1->end(randomdatacol1), -20);
```

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@ -137,6 +137,17 @@ void showPlot() {
gViol3->setViolinPositionMode(pos); gViol3->setViolinPositionMode(pos);
gViol3->setTitle("box violin plot "+d3_latex); gViol3->setTitle("box violin plot "+d3_latex);
// Note that there also exist "adapters" that allow to draw violin plots in one line of code:
/*jkqtpstatAddVViolinplotHistogramAndOutliers(plot->getPlotter(), datastore1->begin(randomdatacol1), datastore1->end(randomdatacol1), -5);
jkqtpstatAddHViolinplotHistogramAndOutliers(plot->getPlotter(), datastore1->begin(randomdatacol1), datastore1->end(randomdatacol1), -5);
jkqtpstatAddVViolinplotHistogram(plot->getPlotter(), datastore1->begin(randomdatacol1), datastore1->end(randomdatacol1), -10);
jkqtpstatAddHViolinplotHistogram(plot->getPlotter(), datastore1->begin(randomdatacol1), datastore1->end(randomdatacol1), -10);
jkqtpstatAddVViolinplotKDEAndOutliers(plot->getPlotter(), datastore1->begin(randomdatacol1), datastore1->end(randomdatacol1), -15);
jkqtpstatAddHViolinplotKDEAndOutliers(plot->getPlotter(), datastore1->begin(randomdatacol1), datastore1->end(randomdatacol1), -15);
jkqtpstatAddVViolinplotKDE(plot->getPlotter(), datastore1->begin(randomdatacol1), datastore1->end(randomdatacol1), -20);
jkqtpstatAddHViolinplotKDE(plot->getPlotter(), datastore1->begin(randomdatacol1), datastore1->end(randomdatacol1), -20);
*/
// autoscale and style the plot // autoscale and style the plot
plot->zoomToFit(); plot->zoomToFit();
plot->getPlotter()->setKeyPosition(JKQTPKeyInsideBottomRight); plot->getPlotter()->setKeyPosition(JKQTPKeyInsideBottomRight);

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@ -967,7 +967,7 @@ inline void jkqtpstat5NumberStatisticsAndOutliersOfSortedVector(const TVector& d
\see https://en.wikipedia.org/wiki/Five-number_summary, jkqtpstatAddVBoxplotAndOutliers, jkqtpstatAddHBoxplotAndOutliers, jkqtpstatAddVBoxplot, jkqtpstatAddHBoxplot, \ref JKQTPlotterBasicJKQTPDatastoreStatistics \see https://en.wikipedia.org/wiki/Five-number_summary, jkqtpstatAddVBoxplotAndOutliers, jkqtpstatAddHBoxplotAndOutliers, jkqtpstatAddVBoxplot, jkqtpstatAddHBoxplot, \ref JKQTPlotterBasicJKQTPDatastoreStatistics
*/ */
template <class InputIt> template <class InputIt>
inline void jkqtpstat5NumberStatistics(InputIt first, InputIt last, double* minimum=nullptr, double minimumQuantile=0, double* median=nullptr, double* maximum=nullptr, double maximumQuantile=1, double quantile1Spec=0.25, double* quantile1=nullptr, double quantile2Spec=0.75, double* quantile2=nullptr, double* IQR=nullptr, double* IQRSignificance=nullptr, size_t* Noutput=nullptr) { inline void jkqtpstat5NumberStatistics(InputIt first, InputIt last, double* minimum, double minimumQuantile=0, double* median=nullptr, double* maximum=nullptr, double maximumQuantile=1, double quantile1Spec=0.25, double* quantile1=nullptr, double quantile2Spec=0.75, double* quantile2=nullptr, double* IQR=nullptr, double* IQRSignificance=nullptr, size_t* Noutput=nullptr) {
std::vector<double> dataFiltered; std::vector<double> dataFiltered;
jkqtpstatFilterGoodFloat(first, last, std::back_inserter(dataFiltered)); jkqtpstatFilterGoodFloat(first, last, std::back_inserter(dataFiltered));
std::sort(dataFiltered.begin(), dataFiltered.end()); std::sort(dataFiltered.begin(), dataFiltered.end());

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@ -32,6 +32,7 @@
#include "jkqtplotter/jkqtpgraphscontour.h" #include "jkqtplotter/jkqtpgraphscontour.h"
#include "jkqtplotter/jkqtpgraphsimpulses.h" #include "jkqtplotter/jkqtpgraphsimpulses.h"
#include "jkqtplotter/jkqtpgraphsfilledcurve.h" #include "jkqtplotter/jkqtpgraphsfilledcurve.h"
#include "jkqtplotter/jkqtpgraphsviolinplot.h"
#ifndef JKQTPGRAPHSSTATISTICSADAPTORS_H_INCLUDED #ifndef JKQTPGRAPHSSTATISTICSADAPTORS_H_INCLUDED
@ -252,6 +253,554 @@ inline std::pair<JKQTPBoxplotVerticalElement*,JKQTPSingleColumnSymbolsGraph*> jk
/*! \brief add a JKQTPViolinplotHorizontalElement to the given plotter, where the Violinplot values are calculated from the data range \a first ... \a last , uses a kernel density estimate as density distribution estimate
\ingroup jkqtptools_math_statistics_adaptors
\tparam InputIt standard iterator type of \a first and \a last.
\param plotter the plotter to which to add the resulting graph
\param first iterator pointing to the first item in the dataset to use \f$ X_1 \f$
\param last iterator pointing behind the last item in the dataset to use \f$ X_N \f$
\param violinposY y-coordinate of the Violinplot
\param kernel the kernel function to use (e.g. jkqtpstatKernel1DGaussian() )
\param bandwidth bandwidth used for the KDE, if <0 then \c jkqtpstatEstimateKDEBandwidth(first,last) is called
\param distBasename name basing for added columns
\param violinDistSamples number of samples of the distribution (between min and max)
\return a Violinplot element with its values initialized from the given data range
Example:
\code
jkqtpstatAddHViolinplotKDE(plot->getPlotter(), datastore1->begin(randomdatacol1), datastore1->end(randomdatacol1), -20);
\endcode
\image html JKQTPGraphViolinplot_ViolinHBoth.png
\see \ref JKQTPlotterViolinplotGraphs, JKQTPViolinplotHorizontalElement, jkqtpstatKDE1DAutoranged()
*/
template <class InputIt>
inline JKQTPViolinplotHorizontalElement* jkqtpstatAddHViolinplotKDE(JKQTBasePlotter* plotter, InputIt first, InputIt last, double violinposY, const std::function<double(double)>& kernel=std::function<double(double)>(&jkqtpstatKernel1DGaussian), double bandwidth=-1, const QString& distBasename=QString("violin plot distribution"), int violinDistSamples=100) {
if (bandwidth<=0) bandwidth=jkqtpstatEstimateKDEBandwidth(first,last);
JKQTPStat5NumberStatistics stat=jkqtpstat5NumberStatistics(first, last);
size_t cViol1Cat=plotter->getDatastore()->addColumn(distBasename+", category");
size_t cViol1Freq=plotter->getDatastore()->addColumn(distBasename+", KDE");
jkqtpstatKDE1DAutoranged(first, last, plotter->getDatastore()->backInserter(cViol1Cat), plotter->getDatastore()->backInserter(cViol1Freq),
violinDistSamples, kernel, bandwidth);
JKQTPViolinplotHorizontalElement* res=new JKQTPViolinplotHorizontalElement(plotter);
res->setMin(stat.minimum);
res->setMax(stat.maximum);
res->setMedian(stat.median);
res->setMean(jkqtpstatAverage(first, last));
res->setDrawMean(true);
res->setDrawMedian(true);
res->setDrawMinMax(true);
res->setPos(violinposY);
res->setViolinPositionColumn(cViol1Cat);
res->setViolinFrequencyColumn(cViol1Freq);
plotter->addGraph(res);
return res;
}
/*! \brief add a JKQTPViolinplotHorizontalElement to the given plotter, where the Violinplot values are calculated from the data range \a first ... \a last , uses a histogram as density distribution estimate
\ingroup jkqtptools_math_statistics_adaptors
\tparam InputIt standard iterator type of \a first and \a last.
\param plotter the plotter to which to add the resulting graph
\param first iterator pointing to the first item in the dataset to use \f$ X_1 \f$
\param last iterator pointing behind the last item in the dataset to use \f$ X_N \f$
\param violinposY y-coordinate of the Violinplot
\param distBasename name basing for added columns
\param violinDistSamples number of bin of the distribution (between min and max)
\return a Violinplot element with its values initialized from the given data range
Example:
\code
jkqtpstatAddHViolinplotHistogram(plot->getPlotter(), datastore1->begin(randomdatacol1), datastore1->end(randomdatacol1), -10);
\endcode
\image html jkqtpstatAddHViolinplotHistogram.png
\see \ref JKQTPlotterViolinplotGraphs, JKQTPViolinplotHorizontalElement, jkqtpstatHistogram1DAutoranged()
*/
template <class InputIt>
inline JKQTPViolinplotHorizontalElement* jkqtpstatAddHViolinplotHistogram(JKQTBasePlotter* plotter, InputIt first, InputIt last, double violinposY, const QString& distBasename=QString("violin plot distribution"), int violinDistSamples=21) {
JKQTPStat5NumberStatistics stat=jkqtpstat5NumberStatistics(first, last);
size_t cViol1Cat=plotter->getDatastore()->addColumn(distBasename+", category");
size_t cViol1Freq=plotter->getDatastore()->addColumn(distBasename+", histogram");
jkqtpstatHistogram1DAutoranged(first, last, plotter->getDatastore()->backInserter(cViol1Cat), plotter->getDatastore()->backInserter(cViol1Freq),
violinDistSamples);
JKQTPViolinplotHorizontalElement* res=new JKQTPViolinplotHorizontalElement(plotter);
res->setMin(stat.minimum);
res->setMax(stat.maximum);
res->setMedian(stat.median);
res->setMean(jkqtpstatAverage(first, last));
res->setDrawMean(true);
res->setDrawMedian(true);
res->setDrawMinMax(true);
res->setPos(violinposY);
res->setViolinPositionColumn(cViol1Cat);
res->setViolinFrequencyColumn(cViol1Freq);
res->setViolinStyle(JKQTPViolinplotHorizontalElement::StepViolin);
plotter->addGraph(res);
return res;
}
/*! \brief add a JKQTPViolinplotVerticalElement to the given plotter, where the Violinplot values are calculated from the data range \a first ... \a last , uses a kernel density estimate as density distribution estimate
\ingroup jkqtptools_math_statistics_adaptors
\tparam InputIt standard iterator type of \a first and \a last.
\param plotter the plotter to which to add the resulting graph
\param first iterator pointing to the first item in the dataset to use \f$ X_1 \f$
\param last iterator pointing behind the last item in the dataset to use \f$ X_N \f$
\param violinposY y-coordinate of the Violinplot
\param kernel the kernel function to use (e.g. jkqtpstatKernel1DGaussian() )
\param bandwidth bandwidth used for the KDE, if <0 then \c jkqtpstatEstimateKDEBandwidth(first,last) is called
\param distBasename name basing for added columns
\param violinDistSamples number of samples of the distribution (between min and max)
\return a Violinplot element with its values initialized from the given data range
Example:
\code
jkqtpstatAddVViolinplotKDE(plot->getPlotter(), datastore1->begin(randomdatacol1), datastore1->end(randomdatacol1), -20);
\endcode
\image html jkqtpstatAddVViolinplotKDE.png
\see \ref JKQTPlotterViolinplotGraphs, JKQTPViolinplotVerticalElement, jkqtpstatKDE1DAutoranged()
*/
template <class InputIt>
inline JKQTPViolinplotVerticalElement* jkqtpstatAddVViolinplotKDE(JKQTBasePlotter* plotter, InputIt first, InputIt last, double violinposY, const std::function<double(double)>& kernel=std::function<double(double)>(&jkqtpstatKernel1DGaussian), double bandwidth=-1, const QString& distBasename=QString("violin plot distribution"), int violinDistSamples=100) {
if (bandwidth<=0) bandwidth=jkqtpstatEstimateKDEBandwidth(first,last);
JKQTPStat5NumberStatistics stat=jkqtpstat5NumberStatistics(first, last);
size_t cViol1Cat=plotter->getDatastore()->addColumn(distBasename+", category");
size_t cViol1Freq=plotter->getDatastore()->addColumn(distBasename+", KDE");
jkqtpstatKDE1DAutoranged(first, last, plotter->getDatastore()->backInserter(cViol1Cat), plotter->getDatastore()->backInserter(cViol1Freq),
violinDistSamples, kernel, bandwidth);
JKQTPViolinplotVerticalElement* res=new JKQTPViolinplotVerticalElement(plotter);
res->setMin(stat.minimum);
res->setMax(stat.maximum);
res->setMedian(stat.median);
res->setMean(jkqtpstatAverage(first, last));
res->setDrawMean(true);
res->setDrawMedian(true);
res->setDrawMinMax(true);
res->setPos(violinposY);
res->setViolinPositionColumn(cViol1Cat);
res->setViolinFrequencyColumn(cViol1Freq);
plotter->addGraph(res);
return res;
}
/*! \brief add a JKQTPViolinplotVerticalElement to the given plotter, where the Violinplot values are calculated from the data range \a first ... \a last , uses a histogram as density distribution estimate
\ingroup jkqtptools_math_statistics_adaptors
\tparam InputIt standard iterator type of \a first and \a last.
\param plotter the plotter to which to add the resulting graph
\param first iterator pointing to the first item in the dataset to use \f$ X_1 \f$
\param last iterator pointing behind the last item in the dataset to use \f$ X_N \f$
\param violinposY y-coordinate of the Violinplot
\param distBasename name basing for added columns
\param violinDistSamples number of bin of the distribution (between min and max)
\return a Violinplot element with its values initialized from the given data range
Example:
\code
jkqtpstatAddVViolinplotHistogram(plot->getPlotter(), datastore1->begin(randomdatacol1), datastore1->end(randomdatacol1), -10);
\endcode
\image html jkqtpstatAddVViolinplotHistogram.png
\see \ref JKQTPlotterViolinplotGraphs, JKQTPViolinplotVerticalElement, jkqtpstatHistogram1DAutoranged()
*/
template <class InputIt>
inline JKQTPViolinplotVerticalElement* jkqtpstatAddVViolinplotHistogram(JKQTBasePlotter* plotter, InputIt first, InputIt last, double violinposY, const QString& distBasename=QString("violin plot distribution"), int violinDistSamples=21) {
JKQTPStat5NumberStatistics stat=jkqtpstat5NumberStatistics(first, last);
size_t cViol1Cat=plotter->getDatastore()->addColumn(distBasename+", category");
size_t cViol1Freq=plotter->getDatastore()->addColumn(distBasename+", histogram");
jkqtpstatHistogram1DAutoranged(first, last, plotter->getDatastore()->backInserter(cViol1Cat), plotter->getDatastore()->backInserter(cViol1Freq),
violinDistSamples);
JKQTPViolinplotVerticalElement* res=new JKQTPViolinplotVerticalElement(plotter);
res->setMin(stat.minimum);
res->setMax(stat.maximum);
res->setMedian(stat.median);
res->setMean(jkqtpstatAverage(first, last));
res->setDrawMean(true);
res->setDrawMedian(true);
res->setDrawMinMax(true);
res->setPos(violinposY);
res->setViolinPositionColumn(cViol1Cat);
res->setViolinFrequencyColumn(cViol1Freq);
res->setViolinStyle(JKQTPViolinplotVerticalElement::StepViolin);
plotter->addGraph(res);
return res;
}
/*! \brief add a JKQTPViolinplotHorizontalElement and an outliers graph to the given plotter, where the Violinplot values are calculated from the data range \a first ... \a last , uses a kernel density estimate as density distribution estimate
\ingroup jkqtptools_math_statistics_adaptors
\tparam InputIt standard iterator type of \a first and \a last.
\param plotter the plotter to which to add the resulting graph
\param first iterator pointing to the first item in the dataset to use \f$ X_1 \f$
\param last iterator pointing behind the last item in the dataset to use \f$ X_N \f$
\param violinposY y-coordinate of the Violinplot
\param kernel the kernel function to use (e.g. jkqtpstatKernel1DGaussian() )
\param bandwidth bandwidth used for the KDE, if <0 then \c jkqtpstatEstimateKDEBandwidth(first,last) is called
\param minimumQuantile specifies a quantile for the return value minimum (default is 0 for the real minimum, but you could e.g. use 0.05 for the 5% quantile!)
\param maximumQuantile specifies a quantile for the return value maximum (default is 1 for the real maximum, but you could e.g. use 0.95 for the 95% quantile!)
\param distBasename name basing for added columns
\param violinDistSamples number of samples of the distribution (between min and max)
\return a Violinplot element with its values initialized from the given data range
Example:
\code
jkqtpstatAddHViolinplotKDEAndOutliers(plot->getPlotter(), datastore1->begin(randomdatacol1), datastore1->end(randomdatacol1), -15);
\endcode
\image html jkqtpstatAddHViolinplotKDEAndOutliers.png
\see \ref JKQTPlotterViolinplotGraphs, JKQTPViolinplotHorizontalElement, jkqtpstatKDE1DAutoranged()
*/
template <class InputIt>
inline std::pair<JKQTPViolinplotHorizontalElement*,JKQTPSingleColumnSymbolsGraph*> jkqtpstatAddHViolinplotKDEAndOutliers(JKQTBasePlotter* plotter, InputIt first, InputIt last, double violinposY, const std::function<double(double)>& kernel=std::function<double(double)>(&jkqtpstatKernel1DGaussian), double bandwidth=-1, double minimumQuantile=0.03, double maximumQuantile=0.97, const QString& distBasename=QString("violin plot distribution"), int violinDistSamples=100) {
size_t cOutliersY=plotter->getDatastore()->addColumn(distBasename+", outliers, value");
std::vector<double> datain, datause;
std::copy(first, last, std::back_inserter(datain));
std::sort(datain.begin(), datain.end());
datause.reserve(datain.size());
size_t i0=jkqtp_boundedRoundTo<size_t>(0,minimumQuantile*static_cast<double>(datain.size()),datain.size()-1);
size_t i1=jkqtp_boundedRoundTo<size_t>(0,maximumQuantile*static_cast<double>(datain.size()),datain.size()-1);
for (size_t i=0; i<datain.size(); i++) {
if (i<=i0 || i>=i1) {
plotter->getDatastore()->appendToColumn(cOutliersY, datain[i]);
} else {
datause.push_back(datain[i]);
}
}
if (datause.size()>0) {
if (bandwidth<=0) bandwidth=jkqtpstatEstimateKDEBandwidth(datause.begin(), datause.end());
size_t cViol1Cat=plotter->getDatastore()->addColumn(distBasename+", category");
size_t cViol1Freq=plotter->getDatastore()->addColumn(distBasename+", KDE");
jkqtpstatKDE1DAutoranged(datause.begin(), datause.end(), plotter->getDatastore()->backInserter(cViol1Cat), plotter->getDatastore()->backInserter(cViol1Freq),
violinDistSamples, kernel, bandwidth);
JKQTPViolinplotHorizontalElement* res=new JKQTPViolinplotHorizontalElement(plotter);
res->setMin(datause[0]);
res->setMax(datause[datause.size()-1]);
res->setMedian(jkqtpstatMedianOfSortedVector(datause));
res->setMean(jkqtpstatAverage(datause.begin(), datause.end()));
res->setDrawMean(true);
res->setDrawMedian(true);
res->setDrawMinMax(true);
res->setPos(violinposY);
res->setViolinPositionColumn(cViol1Cat);
res->setViolinFrequencyColumn(cViol1Freq);
plotter->addGraph(res);
JKQTPSingleColumnSymbolsGraph* resO=new JKQTPSingleColumnSymbolsGraph(plotter);
resO->setDataColumn(cOutliersY);
resO->setPosition(violinposY);
resO->setPositionScatterStyle(JKQTPSingleColumnSymbolsGraph::NoScatter);
resO->setDataDirection(JKQTPSingleColumnSymbolsGraph::DataDirection::X);
resO->setColor(res->getKeyLabelColor());
resO->setTitle("");
plotter->addGraph(res);
plotter->addGraph(resO);
return std::pair<JKQTPViolinplotHorizontalElement*,JKQTPSingleColumnSymbolsGraph*>(res,resO);
} else {
return std::pair<JKQTPViolinplotHorizontalElement*,JKQTPSingleColumnSymbolsGraph*>(nullptr,nullptr);
}
}
/*! \brief add a JKQTPViolinplotHorizontalElement and an outliers graph to the given plotter, where the Violinplot values are calculated from the data range \a first ... \a last , uses a histogram as density distribution estimate
\ingroup jkqtptools_math_statistics_adaptors
\tparam InputIt standard iterator type of \a first and \a last.
\param plotter the plotter to which to add the resulting graph
\param first iterator pointing to the first item in the dataset to use \f$ X_1 \f$
\param last iterator pointing behind the last item in the dataset to use \f$ X_N \f$
\param violinposY y-coordinate of the Violinplot
\param minimumQuantile specifies a quantile for the return value minimum (default is 0 for the real minimum, but you could e.g. use 0.05 for the 5% quantile!)
\param maximumQuantile specifies a quantile for the return value maximum (default is 1 for the real maximum, but you could e.g. use 0.95 for the 95% quantile!)
\param distBasename name basing for added columns
\param violinDistSamples number of samples of the distribution (between min and max)
\return a Violinplot element with its values initialized from the given data range
Example:
\code
jkqtpstatAddHViolinplotHistogramAndOutliers(plot->getPlotter(), datastore1->begin(randomdatacol1), datastore1->end(randomdatacol1), -5);
\endcode
\image html jkqtpstatAddHViolinplotHistogramAndOutliers.png
\see \ref JKQTPlotterViolinplotGraphs, JKQTPViolinplotHorizontalElement, jkqtpstatHistogram1DAutoranged()
*/
template <class InputIt>
inline std::pair<JKQTPViolinplotHorizontalElement*,JKQTPSingleColumnSymbolsGraph*> jkqtpstatAddHViolinplotHistogramAndOutliers(JKQTBasePlotter* plotter, InputIt first, InputIt last, double violinposY, double minimumQuantile=0.03, double maximumQuantile=0.97, const QString& distBasename=QString("violin plot distribution"), int violinDistSamples=21) {
size_t cOutliersY=plotter->getDatastore()->addColumn(distBasename+", outliers, value");
std::vector<double> datain, datause;
std::copy(first, last, std::back_inserter(datain));
std::sort(datain.begin(), datain.end());
datause.reserve(datain.size());
size_t i0=jkqtp_boundedRoundTo<size_t>(0,minimumQuantile*static_cast<double>(datain.size()),datain.size()-1);
size_t i1=jkqtp_boundedRoundTo<size_t>(0,maximumQuantile*static_cast<double>(datain.size()),datain.size()-1);
for (size_t i=0; i<datain.size(); i++) {
if (i<=i0 || i>=i1) {
plotter->getDatastore()->appendToColumn(cOutliersY, datain[i]);
} else {
datause.push_back(datain[i]);
}
}
if (datause.size()>0) {
size_t cViol1Cat=plotter->getDatastore()->addColumn(distBasename+", category");
size_t cViol1Freq=plotter->getDatastore()->addColumn(distBasename+", Histogram");
jkqtpstatHistogram1DAutoranged(datause.begin(), datause.end(), plotter->getDatastore()->backInserter(cViol1Cat), plotter->getDatastore()->backInserter(cViol1Freq), violinDistSamples);
JKQTPViolinplotHorizontalElement* res=new JKQTPViolinplotHorizontalElement(plotter);
res->setMin(datause[0]);
res->setMax(datause[datause.size()-1]);
res->setMedian(jkqtpstatMedianOfSortedVector(datause));
res->setMean(jkqtpstatAverage(datause.begin(), datause.end()));
res->setDrawMean(true);
res->setDrawMedian(true);
res->setDrawMinMax(true);
res->setPos(violinposY);
res->setViolinPositionColumn(cViol1Cat);
res->setViolinFrequencyColumn(cViol1Freq);
res->setViolinStyle(JKQTPViolinplotVerticalElement::StepViolin);
plotter->addGraph(res);
JKQTPSingleColumnSymbolsGraph* resO=new JKQTPSingleColumnSymbolsGraph(plotter);
resO->setDataColumn(cOutliersY);
resO->setPosition(violinposY);
resO->setPositionScatterStyle(JKQTPSingleColumnSymbolsGraph::NoScatter);
resO->setDataDirection(JKQTPSingleColumnSymbolsGraph::DataDirection::X);
resO->setColor(res->getKeyLabelColor());
resO->setTitle("");
plotter->addGraph(res);
plotter->addGraph(resO);
return std::pair<JKQTPViolinplotHorizontalElement*,JKQTPSingleColumnSymbolsGraph*>(res,resO);
} else {
return std::pair<JKQTPViolinplotHorizontalElement*,JKQTPSingleColumnSymbolsGraph*>(nullptr,nullptr);
}
}
/*! \brief add a JKQTPViolinplotVerticalElement and an outliers graph to the given plotter, where the Violinplot values are calculated from the data range \a first ... \a last , uses a kernel density estimate as density distribution estimate
\ingroup jkqtptools_math_statistics_adaptors
\tparam InputIt standard iterator type of \a first and \a last.
\param plotter the plotter to which to add the resulting graph
\param first iterator pointing to the first item in the dataset to use \f$ X_1 \f$
\param last iterator pointing behind the last item in the dataset to use \f$ X_N \f$
\param violinposY y-coordinate of the Violinplot
\param kernel the kernel function to use (e.g. jkqtpstatKernel1DGaussian() )
\param bandwidth bandwidth used for the KDE, if <0 then \c jkqtpstatEstimateKDEBandwidth(first,last) is called
\param minimumQuantile specifies a quantile for the return value minimum (default is 0 for the real minimum, but you could e.g. use 0.05 for the 5% quantile!)
\param maximumQuantile specifies a quantile for the return value maximum (default is 1 for the real maximum, but you could e.g. use 0.95 for the 95% quantile!)
\param distBasename name basing for added columns
\param violinDistSamples number of samples of the distribution (between min and max)
\return a Violinplot element with its values initialized from the given data range
Example:
\code
jkqtpstatAddVViolinplotKDEAndOutliers(plot->getPlotter(), datastore1->begin(randomdatacol1), datastore1->end(randomdatacol1), -15);
\endcode
\image html jkqtpstatAddVViolinplotKDEAndOutliers.png
\see \ref JKQTPlotterViolinplotGraphs, JKQTPViolinplotVerticalElement, jkqtpstatKDE1DAutoranged()
*/
template <class InputIt>
inline std::pair<JKQTPViolinplotVerticalElement*,JKQTPSingleColumnSymbolsGraph*> jkqtpstatAddVViolinplotKDEAndOutliers(JKQTBasePlotter* plotter, InputIt first, InputIt last, double violinposY, const std::function<double(double)>& kernel=std::function<double(double)>(&jkqtpstatKernel1DGaussian), double bandwidth=-1, double minimumQuantile=0.03, double maximumQuantile=0.97, const QString& distBasename=QString("violin plot distribution"), int violinDistSamples=100) {
size_t cOutliersY=plotter->getDatastore()->addColumn(distBasename+", outliers, value");
std::vector<double> datain, datause;
std::copy(first, last, std::back_inserter(datain));
std::sort(datain.begin(), datain.end());
datause.reserve(datain.size());
size_t i0=jkqtp_boundedRoundTo<size_t>(0,minimumQuantile*static_cast<double>(datain.size()),datain.size()-1);
size_t i1=jkqtp_boundedRoundTo<size_t>(0,maximumQuantile*static_cast<double>(datain.size()),datain.size()-1);
for (size_t i=0; i<datain.size(); i++) {
if (i<=i0 || i>=i1) {
plotter->getDatastore()->appendToColumn(cOutliersY, datain[i]);
} else {
datause.push_back(datain[i]);
}
}
if (datause.size()>0) {
if (bandwidth<=0) bandwidth=jkqtpstatEstimateKDEBandwidth(datause.begin(), datause.end());
size_t cViol1Cat=plotter->getDatastore()->addColumn(distBasename+", category");
size_t cViol1Freq=plotter->getDatastore()->addColumn(distBasename+", KDE");
jkqtpstatKDE1DAutoranged(datause.begin(), datause.end(), plotter->getDatastore()->backInserter(cViol1Cat), plotter->getDatastore()->backInserter(cViol1Freq),
violinDistSamples, kernel, bandwidth);
JKQTPViolinplotVerticalElement* res=new JKQTPViolinplotVerticalElement(plotter);
res->setMin(datause[0]);
res->setMax(datause[datause.size()-1]);
res->setMedian(jkqtpstatMedianOfSortedVector(datause));
res->setMean(jkqtpstatAverage(datause.begin(), datause.end()));
res->setDrawMean(true);
res->setDrawMedian(true);
res->setDrawMinMax(true);
res->setPos(violinposY);
res->setViolinPositionColumn(cViol1Cat);
res->setViolinFrequencyColumn(cViol1Freq);
plotter->addGraph(res);
JKQTPSingleColumnSymbolsGraph* resO=new JKQTPSingleColumnSymbolsGraph(plotter);
resO->setDataColumn(cOutliersY);
resO->setPosition(violinposY);
resO->setPositionScatterStyle(JKQTPSingleColumnSymbolsGraph::NoScatter);
resO->setDataDirection(JKQTPSingleColumnSymbolsGraph::DataDirection::Y);
resO->setColor(res->getKeyLabelColor());
resO->setTitle("");
plotter->addGraph(res);
plotter->addGraph(resO);
return std::pair<JKQTPViolinplotVerticalElement*,JKQTPSingleColumnSymbolsGraph*>(res,resO);
} else {
return std::pair<JKQTPViolinplotVerticalElement*,JKQTPSingleColumnSymbolsGraph*>(nullptr,nullptr);
}
}
/*! \brief add a JKQTPViolinplotVerticalElement and an outliers graph to the given plotter, where the Violinplot values are calculated from the data range \a first ... \a last , uses a histogram as density distribution estimate
\ingroup jkqtptools_math_statistics_adaptors
\tparam InputIt standard iterator type of \a first and \a last.
\param plotter the plotter to which to add the resulting graph
\param first iterator pointing to the first item in the dataset to use \f$ X_1 \f$
\param last iterator pointing behind the last item in the dataset to use \f$ X_N \f$
\param violinposY y-coordinate of the Violinplot
\param minimumQuantile specifies a quantile for the return value minimum (default is 0 for the real minimum, but you could e.g. use 0.05 for the 5% quantile!)
\param maximumQuantile specifies a quantile for the return value maximum (default is 1 for the real maximum, but you could e.g. use 0.95 for the 95% quantile!)
\param distBasename name basing for added columns
\param violinDistSamples number of samples of the distribution (between min and max)
\return a Violinplot element with its values initialized from the given data range
Example:
\code
jkqtpstatAddVViolinplotHistogramAndOutliers(plot->getPlotter(), datastore1->begin(randomdatacol1), datastore1->end(randomdatacol1), -5);
\endcode
\image html jkqtpstatAddVViolinplotHistogramAndOutliers.png
\see \ref JKQTPlotterViolinplotGraphs, JKQTPViolinplotVerticalElement, jkqtpstatHistogram1DAutoranged()
*/
template <class InputIt>
inline std::pair<JKQTPViolinplotVerticalElement*,JKQTPSingleColumnSymbolsGraph*> jkqtpstatAddVViolinplotHistogramAndOutliers(JKQTBasePlotter* plotter, InputIt first, InputIt last, double violinposY, double minimumQuantile=0.03, double maximumQuantile=0.97, const QString& distBasename=QString("violin plot distribution"), int violinDistSamples=21) {
size_t cOutliersY=plotter->getDatastore()->addColumn(distBasename+", outliers, value");
std::vector<double> datain, datause;
std::copy(first, last, std::back_inserter(datain));
std::sort(datain.begin(), datain.end());
datause.reserve(datain.size());
size_t i0=jkqtp_boundedRoundTo<size_t>(0,minimumQuantile*static_cast<double>(datain.size()),datain.size()-1);
size_t i1=jkqtp_boundedRoundTo<size_t>(0,maximumQuantile*static_cast<double>(datain.size()),datain.size()-1);
for (size_t i=0; i<datain.size(); i++) {
if (i<=i0 || i>=i1) {
plotter->getDatastore()->appendToColumn(cOutliersY, datain[i]);
} else {
datause.push_back(datain[i]);
}
}
if (datause.size()>0) {
size_t cViol1Cat=plotter->getDatastore()->addColumn(distBasename+", category");
size_t cViol1Freq=plotter->getDatastore()->addColumn(distBasename+", Histogram");
jkqtpstatHistogram1DAutoranged(datause.begin(), datause.end(), plotter->getDatastore()->backInserter(cViol1Cat), plotter->getDatastore()->backInserter(cViol1Freq), violinDistSamples);
JKQTPViolinplotVerticalElement* res=new JKQTPViolinplotVerticalElement(plotter);
res->setMin(datause[0]);
res->setMax(datause[datause.size()-1]);
res->setMedian(jkqtpstatMedianOfSortedVector(datause));
res->setMean(jkqtpstatAverage(datause.begin(), datause.end()));
res->setDrawMean(true);
res->setDrawMedian(true);
res->setDrawMinMax(true);
res->setPos(violinposY);
res->setViolinPositionColumn(cViol1Cat);
res->setViolinFrequencyColumn(cViol1Freq);
res->setViolinStyle(JKQTPViolinplotVerticalElement::StepViolin);
plotter->addGraph(res);
JKQTPSingleColumnSymbolsGraph* resO=new JKQTPSingleColumnSymbolsGraph(plotter);
resO->setDataColumn(cOutliersY);
resO->setPosition(violinposY);
resO->setPositionScatterStyle(JKQTPSingleColumnSymbolsGraph::NoScatter);
resO->setDataDirection(JKQTPSingleColumnSymbolsGraph::DataDirection::Y);
resO->setColor(res->getKeyLabelColor());
resO->setTitle("");
plotter->addGraph(res);
plotter->addGraph(resO);
return std::pair<JKQTPViolinplotVerticalElement*,JKQTPSingleColumnSymbolsGraph*>(res,resO);
} else {
return std::pair<JKQTPViolinplotVerticalElement*,JKQTPSingleColumnSymbolsGraph*>(nullptr,nullptr);
}
}
/*! \brief calculate an autoranged histogram and add a JKQTPBarVerticalGraph to the given plotter, where the histogram is calculated from the data range \a first ... \a last, bins defined by their number /*! \brief calculate an autoranged histogram and add a JKQTPBarVerticalGraph to the given plotter, where the histogram is calculated from the data range \a first ... \a last, bins defined by their number
\ingroup jkqtptools_math_statistics_adaptors \ingroup jkqtptools_math_statistics_adaptors